{"id":198,"date":"2023-10-10T12:44:56","date_gmt":"2023-10-10T10:44:56","guid":{"rendered":"http:\/\/eines-informatiques.recursos.uoc.edu\/workflows\/?page_id=198"},"modified":"2025-02-11T14:48:43","modified_gmt":"2025-02-11T12:48:43","slug":"2-8-nf-core","status":"publish","type":"page","link":"http:\/\/eines-informatiques.recursos.uoc.edu\/workflows\/2-8-nf-core\/","title":{"rendered":"2.8. <em>nf-core<\/em>"},"content":{"rendered":"<p>Com altres iniciatives que ja hem tractat anteriorment, Nextflow tamb\u00e9 t\u00e9 un repositori de <em>workflows<\/em> per poder ser executats. Aquest conjunt de <em>pipelines<\/em> s\u2019agrupa en el projecte <em>nf-core<\/em> (<a href=\"https:\/\/nf-co.re\/\" target=\"_blank\" rel=\"noopener\">https:\/\/nf-co.re\/<\/a>). Per poder treballar directament des de el terminal s\u2019ha generat el paquet <em>nf-core tools<\/em> per poder gestionar els diferents <em>workflows<\/em> accessibles en <em>nf-core. nf-core tools<\/em> est\u00e0 escrit a Python i es pot instal\u00b7lar des de la seg\u00fcent adre\u00e7a: <a href=\"https:\/\/nf-co.re\/tools\" target=\"_blank\" rel=\"noopener\">https:\/\/nf-co.re\/tools<\/a>.<\/p>\n<p>Per poder veure els diferents paquets simplement es pot fer un llistat:<\/p>\n<pre class=\"EnlighterJSRAW\" data-enlighter-language=\"bash\" data-enlighter-theme=\"mowtwo\">$ nf-core list<\/pre>\n<p>Moltes vegades necessitem ser m\u00e9s espec\u00edfics en la nostra recerca i, per aix\u00f2, podem filtrar:<\/p>\n<pre class=\"EnlighterJSRAW\" data-enlighter-language=\"bash\" data-enlighter-theme=\"mowtwo\">$ nf-core list rna<\/pre>\n<p>O fins i tot ordenar per estrelles:<\/p>\n<pre class=\"EnlighterJSRAW\" data-enlighter-language=\"raw\" data-enlighter-theme=\"droide\">nf-core list rna --sort stars<\/pre>\n<p>Cada repositori t\u00e9 la seva pr\u00f2pia p\u00e0gina amb instruccions i documentaci\u00f3. La utilitzaci\u00f3 d\u2019aquests repositoris p\u00fablics permet un aprenentatge m\u00e9s r\u00e0pid de les eines de Nextflow en el context espec\u00edfic de la bioinform\u00e0tica. Igualment,<em> nf-core<\/em> tamb\u00e9 proporciona un canal directe de preguntes mitjan\u00e7ant un compte a Slack (<a href=\"https:\/\/nf-co.re\/join\" target=\"_blank\" rel=\"noopener\">https:\/\/nf-co.re\/join<\/a>).<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Com altres iniciatives que ja hem tractat anteriorment, Nextflow tamb\u00e9 t\u00e9 un repositori de workflows per poder ser executats. Aquest conjunt de pipelines s\u2019agrupa en el projecte nf-core (https:\/\/nf-co.re\/). Per poder treballar directament des de el terminal s\u2019ha generat el paquet nf-core tools per poder gestionar els diferents workflows accessibles en nf-core. nf-core tools est\u00e0 [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"acf":[],"_links":{"self":[{"href":"http:\/\/eines-informatiques.recursos.uoc.edu\/workflows\/wp-json\/wp\/v2\/pages\/198"}],"collection":[{"href":"http:\/\/eines-informatiques.recursos.uoc.edu\/workflows\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/eines-informatiques.recursos.uoc.edu\/workflows\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/eines-informatiques.recursos.uoc.edu\/workflows\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/eines-informatiques.recursos.uoc.edu\/workflows\/wp-json\/wp\/v2\/comments?post=198"}],"version-history":[{"count":8,"href":"http:\/\/eines-informatiques.recursos.uoc.edu\/workflows\/wp-json\/wp\/v2\/pages\/198\/revisions"}],"predecessor-version":[{"id":298,"href":"http:\/\/eines-informatiques.recursos.uoc.edu\/workflows\/wp-json\/wp\/v2\/pages\/198\/revisions\/298"}],"wp:attachment":[{"href":"http:\/\/eines-informatiques.recursos.uoc.edu\/workflows\/wp-json\/wp\/v2\/media?parent=198"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}